Portal de Transparencia

Actividad investigadora:

• Artículos en revistas
  • [2019] Evaluating FAIR maturity through a scalable, automated, community- governed framework
  • [2018] A Design Framework and Exemplar Metrics for FAIRness
  • [2018] MDPbiome: Microbiome Engineering through Prescriptive Perturbations
  • [2018] MECP2 variation in Rett syndrome-An overview of current coverage of genetic and phenotype data within existing databases
  • [2018] Virulence- and Signaling-Associated Genes Display a Preference for Long 3' UTRs during Rice Infection and Metabolic Stress in the Rice Blast Fungus
  • [2017] Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud
  • [2017] Interoperability and FAIRness through a novel combination of Web technologies
  • [2017] Interoperability and FAIRness through a novel combination of Web technologies
  • [2016] Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae
  • [2016] Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base
  • [2016] Publishing FAIR Data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science
  • [2016] The FAIR Guiding Principles for scientific data management and stewardship
  • [2015] Enhanced reproducibility of SADI web service workflows with Galaxy and Docke
  • [2015] Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
  • [2015] Extracting Diagnostic Knowledge from MedLine Plus: a Comparison between MetaMap and cTAKES Approaches
  • [2015] Extracting Diagnostic Knowledge from MedLine Plus: a Comparison between MetaMap and cTAKES Approaches
  • [2015] Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples
  • [2015] VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock
  • [2014] The relationship between host lifespan and pathogen reservoir potential: An analysis in the system Arabidopsis thaliana-Cucumber mosaic virus
  • [2013] OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows
  • [2013] The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
  • [2013] The Emergent Discipline of Health Web Science
  • [2013] The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions
  • [2012] Analysis of a Multilevel Diagnosis Decision Support System and Its Implications: A Case Study
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• Capítulos de libros
  • [2017] Preparing Data at the Source to Foster Interoperability across Rare Disease Resources
  • [2016] FAIR Data Points Supporting Big Data Interoperabilit
  • [2015] Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
  • [2015] Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
  • [2015] Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
  • [2014] Bioinformatics tools for Next-Generation RNA sequencing analysis
  • [2012] Genomics Data Resources: Frameworks and Standards
  • [2012] Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies
  • [2012] OWL-DL Domain-Models as Abstract Workflows
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• Conferencias invitadas en congresos
  • [2019] Measuring FAIRness - Open Science Conference 2019
  • [2019] Student Organized Workshop on Forces in Biomolecular Systems
  • [2016] BYOD (Bring Your Own Data Workshop series)
  • [2016] BYOD (Bring Your Own Data Workshop series)
  • [2016] Data FAIRness Through Existing Web Technologies.
  • [2016] Data FAIRness Through Existing Web Technologies.
  • [2015] From hypothesis construction, through experimental execution, to result publication and citation
  • [2013] Post-transcriptional regulation of Magnaporthe oryzae pathogenicity genes
  • [2012] A data-driven approach to automatic discovery of prescription drugs in cardiovascular risk management
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• Creación de empresas
  • [2019] FAIR Data Systems
• Cursos, seminarios y tutoriales
  • [2016] Advanced Bioinformatics
  • [2015] Conducting in silico research IN the Web: from hypothesis to publication
  • [2015] Improving Scientific Reproducibility through Semantics
  • [2015] Improving Scientific Reproducibility through Semantics
  • [2015] Improving Scientific Reproducibility through Semantics
  • [2015] Using the Semantic Web for faster (Bio-)Research
  • [2015] VII JORNADA CIENTÍFICA CENTRO DE BIOTECNOLOGÍA Y GENÓMICA DE PLANTAS. UPM-INIA (CBGP) 25 de Septiembre de 2015 Sala de Seminarios del CBGP, Campus de Montegancedo UPM
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• Estancias y sabáticos recogidos en programas oficiales
  • [2017] Estancia de Mario Prieto en Dutch Techcentre for Life Sciences
• Otras Publicaciones
  • [2017] A design framework and exemplar metrics for FAIRness
  • [2017] FAIRMetrics/Metrics: Initial set of proposed FAIR Metrics for community discussion
• Ponencia en Congresos
  • [2019] Condensed Microbiome representation using Transfer and Deep Learning to Promote Microbial Composition Prediction
  • [2019] Epigenetic regulation by H3K27 methylation in Brassica rapa
  • [2019] Modeling recovery of Crohn's disease, by simulating microbial community dynamics under perturbations
  • [2018] Unraveling Certainty in Bio-Scholarly Statements
  • [2017] Boosting genotype-phenotype and translational research on rare diseases by establishing Findable, Accessible, Interoperable and Reusable (FAIR) data resources through data linking technologies.
  • [2017] Boosting genotype-phenotype and translational research on rare diseases by establishing Findable, Accessible, Interoperable and Reusable data resources through data linking technologies
  • [2017] Boosting health care and life science research on rare diseases by creating a robust infrastructure of independently Findable, Accessible, Interoperable, and Reusable (FAIR) biobanks, registries, and molecular data resources
  • [2017] Bring Your Own Data workshop is an excellent tool to promote the establishment of Findable, Accessible, Interoperable, and Reusable rare disease registries
  • [2017] Overview of a suite of middle-ware services for implementing FAIR data principles
  • [2017] The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop
  • [2017] The FAIRification of data and the potentialities of FAIR resources showed, in practice, at the Rome ?Bring Your Own Data? workshop
  • [2016] Alternative polyadenylation regulates plant development and response to stress
  • [2016] Approaches to formally tracking, representing, and validating scientific argumentation
  • [2016] Hypothesis from Nanopublications created by SADI services
  • [2015] Applying Bioinformatics Tools to explore the evolution of the mRNA processing machinery in the fungal kingdom
  • [2015] Bioinformatic analysis of Magnaporthe oryzae polyadenylation sites from next generation sequencing data
  • [2015] Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
  • [2015] The relationship between host lifespan and pathogen reservoir potential: an analysis in the system Arabidopsis thaliana-Cucomber mosaic virus
  • [2013] Web Science Studies into Semantic Web Service-Based Research Environments
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• Premios
  • [2019] Premio UPM al artículo científico más citado (UPM Most Cited Article Award)
  • [2013] Premio al Mejor Artículo en la "International Academy, Research, and Industry Association's Service Computation 2013 Conference"
• Proyectos de I+D+i
  • [2019] EJP RD: European Joint Programme on Rare Diseases
  • [2019] PERFORM TRAINING MODULES ON FAIR DATA STEWARDSHIP COURSES OFFERED BY PHORTOS
  • [2018] EMMA: Aclaración de los mecanismos moleculares conectando el nudo AMI1 con el equilibrio entre crecimiento y defensa
  • [2018] SUBPROGRAMA ESTATAL DE FORTALECIMIENTO INSTITUCIONAL. CENTROS DE EXCELENCIA SEVERO OCHOA Y UNIDADES DE EXCELENCIA MARÍA DE MAEZTU
  • [2015] PlantFrontiers: Nuevas fronteras de la biología de plantas
  • [2015] QTPIE: Calidad y Confianza de Procedencia en e-Ciencia
  • [2012] Programa Isaac Peral - Bioninformática
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• Registros de Software
  • [2015] DataFairPort: The Perl libraries version 0.231
  • [2015] DataFairPort: The Perl libraries version 0.231
• Responsabilidades
  • [2019] Miembros del Consejo Científico Asesor del CBGP
  • [2018] Miembros del Consejo Científico Asesor del CBGP
  • [2017] Miembros del Consejo Científico Asesor del CBGP
  • [2016] 'Skunkworks' Lead, Europe
  • [2016] ?Skunkworks? Lead, Europe,
  • [2016] Advisory Board
  • [2016] Editor
  • [2016] Editor
  • [2016] Editor
  • [2016] Internal Scientific Advisory Committee Member
  • [2016] Invited expert
  • [2016] Programme Committee Member,
  • [2016] Scientific Advisory Board Member,
  • [2016] Trustee Board Member
  • [2015] Organizador
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• Tesis Doctorales
  • [2019] Detection and formal classification of certainty and its application to text mining of chains of scholarly statements
  • [2017] Bioinformatic approaches to understand RNA biology in the rice blast fungus
  • [2016] FAIR approaches applied to unraveling Plant-Pathogen Interactions Data and RNA Processing Evolution